Biblio

J. Nesme, Achouak, W., Agathos, S. N., Bailey, M., Baldrian, P., Brunel, D., ård, Å., Heulin, T., Jansson, J. K., Jurkevitch, E., Kruus, K. L., Kowalchuk, G. A., Lagares, A., Lappin-Scott, H. M., Lemanceau, P., Le Paslier, D., Mandic-Mulec, I., J. Murrell, C., Myrold, D. D., Nalin, R., Nannipieri, P., Neufeld, J. D., O'Gara, F., Parnell, J. J., Pühler, A., Pylro, V., Ramos, J. L., Roesch, L. F. W., Schloter, M., Schleper, C., Sczyrba, A., Sessitsch, A., Sjöling, S., ørensen, J., ørensen, ørenJ., Tebbe, C. C., Topp, E., Tsiamis, G., van Elsas, J. Dirk, van Keulen, G., Widmer, F., Wagner, M., Zhang, T., Zhang, X., Zhao, L., Zhu, Y. - G., Vogel, T. M., and Simonet, P., “Back to the Future of Soil Metagenomics”, Frontiers in Microbiology, vol. 7, no. 73, 2016.

P. J. Bottomley and Myrold, D. D., “Biological nitrogen fixation: The return of N to the soil”, in Soil Microbiology, Ecology, and Biochemistry, 4thth ed., San Diego, CA: Academic Press, 2015, pp. 447-470.

X. Lu, Bottomley, P. J., and Myrold, D. D., “Contributions of ammonia-oxidizing archaea and bacteria to nitrification in Oregon forest soils”, Soil Biology and Biochemistry, vol. 85, pp. 54 - 62, 2015.

A. E. Taylor, Taylor, K., Tennigkeit, B., Palatinszky, M., Stieglmeier, M., Myrold, D. D., Schleper, C., Wagner, M., and Bottomley, P. J., “Inhibitory Effects of C2 to C10 1-Alkynes on Ammonia Oxidation in Two Nitrososphaera Species”, Applied and Environmental Microbiology, vol. 81, no. 6, pp. 1942 - 1948, 2015.

A. T. Giguere, Taylor, A. E., Myrold, D. D., and Bottomley, P. J., “Nitrification Responses of Soil Ammonia-Oxidizing Archaea and Bacteria to Ammonium Concentrations”, Soil Science Society of America Journal, vol. 79, no. 5, p. 1366, 2015.

S. Intanon, Hulting, A. G., Myrold, D. D., and Mallory-Smith, C., “Short-term effects of soil amendment with meadowfoam seed meal on soil microbial composition and function”, Applied Soil Ecology, vol. 89, pp. 85 - 92, 2015.

D. D. Myrold and Nannipieri, P., “Classical Techniques Versus Omics Approaches”, in Omics in Soil Science , 2014.

E. Hiltbrunner, Aerts, R., ühlmann, T., Huss-Danell, K., Magnusson, B., Myrold, D. D., Reed, S. C., Sigurdsson, B. D., and Körner, C., “Ecological consequences of the expansion of N2-fixing plants in cold biomes”, Oecologia, vol. 176, no. 1, pp. 11 - 24, 2014.

E. Prestat, David, M. M., Hultman, J., Tas, N., Lamendella, R., Dvornik, J., Mackelprang, R., Myrold, D. D., Jumpponen, A., Tringe, S. G., Holman, E., Mavromatis, K., and Jansson, J. K., “FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus”, Nucleic Acids Research, vol. 42, no. 19, pp. e145 - e145, 2014.

N. Davies, Field, D., Amaral-Zettler, L., Clark, M. S., Deck, J., Drummond, A., Faith, D. P., Geller, J., Gilbert, J., Glöckner, F. Oliver, Hirsch, P. R., Leong, J. - A., Meyer, C., Obst, M., Planes, S., Scholin, C., Vogler, A. P., Gates, R. D., Toonen, R., Berteaux-Lecellier, éronique, Barbier, èle, Barker, K., Bertilsson, S., Bicak, M., Bietz, M. J., Bobe, J., Bodrossy, L., Borja, A., Coddington, J., Fuhrman, J., Gerdts, G., Gillespie, R., Goodwin, K., Hanson, P. C., Hero, J. - M., Hoekman, D., Jansson, J., Jeanthon, C., Kao, R., Klindworth, A., Knight, R., Kottmann, R., Koo, M. S., Kotoulas, G., Lowe, A. J., ó Marteinsson, T., Meyer, F., Morrison, N., Myrold, D. D., Pafilis, E., Parker, S., Parnell, J. Jacob, Polymenakou, P. N., Ratnasingham, S., Roderick, G. K., Rodriguez-Ezpeleta, N., Schonrogge, K., Simon, N., Valette-Silver, N. J., Springer, Y. P., Stone, G. N., Stones-Havas, S., Sansone, S. - A., Thibault, K. M., Wecker, P., Wichels, A., Wooley, J. C., Yahara, T., and Zingone, A., “The founding charter of the Genomic Observatories Network”, GigaScience, vol. 3, no. 1, 2014.

M. N. Högberg, Yarwood, S. A., and Myrold, D. D., “Fungal but not bacterial soil communities recover after termination of decadal nitrogen additions to boreal forest”, Soil Biology and Biochemistry, vol. 72, pp. 35 - 43, 2014.

M. Kaiser, Ghezzehei, T. A., Kleber, M., Myrold, D. D., and Berhe, A. Asefaw, “Influence of Calcium Carbonate and Charcoal Applications on Organic Matter Storage in Silt-Sized Aggregates Formed during a Microcosm Experiment”, Soil Science Society of America Journal, vol. 78, no. 5, p. 1624, 2014.

D. D. Myrold, Zeglin, L. H., and Jansson, J. K., “The Potential of Metagenomic Approaches for Understanding Soil Microbial Processes”, Soil Science Society of America Journal, vol. 78, no. 1, p. 3, 2014.

L. H. Zeglin, Bottomley, P. J., Jumpponen, A., Rice, C. W., Arango, M., Lindsley, A. E., McGowan, A., Mfombep, P., and Myrold, D. D., “Altered precipitation regime affects the function and composition of soil microbial communities on multiple time scales”, Ecology, vol. 94, no. 10, pp. 2334 - 2345, 2013.

S. A. Kageyama, Posavatz, N. R., Jones, S. S., Waterstripe, K. E., Bottomley, P. J., Cromack, K., and Myrold, D. D., “Effects of disturbance scale on soil microbial communities in the Western Cascades of Oregon”, Plant and Soil, vol. 372, no. 1-2, pp. 459 - 471, 2013.

L. H. Zeglin and Myrold, D. D., “Fate of Decomposed Fungal Cell Wall Material in Organic Horizons of Old-Growth Douglas-fir Forest Soils”, Soil Science Society of America Journal, vol. 77, no. 2, p. 489, 2013.

L. H. Zeglin, Kluber, L. A., and Myrold, D. D., “The importance of amino sugar turnover to C and N cycling in organic horizons of old-growth Douglas-fir forest soils colonized by ectomycorrhizal mats”, Biogeochemistry, vol. 112, no. 1-356610484658128621122315162951022–328–91211236462929, pp. 679 - 693, 2013.

J. Hanzel, Myrold, D. D., Sessitsch, A., Smalla, K., Tebbe, C. C., and Totsche, K. Uwe, “Microbial ecology of biogeochemical interfaces - diversity, structure, and function of microhabitats in soil”, FEMS Microbiology Ecology, vol. 86, no. 1, pp. 1 - 2, 2013.

S. Yarwood, Brewer, E., Yarwood, R., Lajtha, K., and Myrold, D. D., “Soil Microbe Active Community Composition and Capability of Responding to Litter Addition after 12 Years of No Inputs”, Applied and Environmental Microbiology, vol. 79, no. 4, pp. 1385 - 1392, 2013.

A. E. Taylor, Vajrala, N., Giguere, A. T., Gitelman, A. I., Arp, D. J., Myrold, D. D., Sayavedra-Soto, L. A., and Bottomley, P. J., “Use of Aliphatic n-Alkynes To Discriminate Soil Nitrification Activities of Ammonia-Oxidizing Thaumarchaea and Bacteria”, Applied and Environmental Microbiology, vol. 79, no. 21, pp. 6544 - 6551, 2013.

P. J. Bottomley, Taylor, A. E., and Myrold, D. D., “A consideration of the relative contributions of different microbial subpopulations to the soil N cycle”, Frontiers in Microbiology, vol. 3, 2012.

A. E. Taylor, Zeglin, L. H., Wanzek, T. A., Myrold, D. D., and Bottomley, P. J., “Dynamics of ammonia-oxidizing archaea and bacteria populations and contributions to soil nitrification potentials”, The ISME Journal, vol. 6, no. 11, pp. 2024 - 2032, 2012.

R. González-Pinzón, HAGGERTY, R. O. Y., and Myrold, D. D., “Measuring aerobic respiration in stream ecosystems using the resazurin-resorufin system”, Journal of Geophysical Research: Biogeosciences, vol. 117, no. G314, p. n/a - n/a, 2012.

M. Keiluweit, Bougoure, J. J., Zeglin, L. H., Myrold, D. D., Weber, P. K., Pett-Ridge, J., Kleber, M., and Nico, P. S., “Nano-scale investigation of the association of microbial nitrogen residues with iron (hydr)oxides in a forest soil O-horizon”, Geochimica et Cosmochimica Acta, vol. 95, pp. 213 - 226, 2012.

L. H. Zeglin, Taylor, A. E., Myrold, D. D., and Bottomley, P. J., “Bacterial and archaeal amoA gene distribution covaries with soil nitrification properties across a range of land uses”, Environmental Microbiology Reports, vol. 3, no. 6, pp. 717 - 726, 2011.