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Journal Article
S. SL, Moghaddas, J. J., Edminster, C., Fiedler, C. E., Haase, S., Harrington, M., Keeley, J. E., Knapp, E. E., McIver, J., Metlen, K., Skinner, C., and Youngblood, A., Fire and fire surrogate treatment effects on vegetation structure, fuels, and potential fire behavior and severity from six western United States coniferous forests, Ecological Applications , vol. 19, pp. 305-320, 2009.
S. L. Stephens, Moghaddas, J. J., Edminster, C., Fiedler, C. E., Haase, S., Harrington, M., Keeley, J. E., Knapp, E. E., McIver, J., Metlen, K., Skinner, C. N., and Youngblood, A., Fire treatment effects on vegetation structure, fuels, and potential fire severity in western U.S. forests, Ecological Applications, vol. 191221782710310147781031413, no. 2, pp. 305 - 320, 2009.
M. Golpinath, Sheldon, I., and Echeverria, R., Firm heterogeneity and international trade: Implications for agricultural and food industries, IATRC Trade Policy Issues Paper, vol. 5, 2007.
J. M. Crosslin, Hamm, P. B., Eggers, J. E., Rondon, S. I., Sengoda, V. G., and Munyaneza, J. E., First Report of Zebra Chip Disease and “Candidatus Liberibacter solanacearum” on Potatoes in Oregon and Washington State, Plant Disease, vol. 96, no. 3, pp. 452 - 452, 2012.
J. M. Crosslin, Hamm, P. B., Eggers, J. E., Rondon, S. I., Sengoda, V. G., and Munyaneza, J. E., First report of zebra chip disease and “Candidatus Liberibacter solanacearum” on potatoes in Oregon and Washington State, Plant Disease, vol. 96, no. 3, p. 452, 2012.
B. K. Pekin, Endress, B. A., Wisdom, M. J., Naylor, B. J., and Parks, C. G., Forest understory responses to ungulate herbivory following stand thinning and fire, Journal of Applied Vegetation Science, 2017.
S. Naithani, Partipilo, C. M., Raja, R., Elser, J. L., and Jaiswal, P., FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca., Frontiers in plant science, vol. 7, p. 242, 2016.
C. G. Jones, érrez, J. L., Byers, J. E., Crooks, J. A., Lambrinos, J. G., and Talley, T. S., A framework for understanding physical ecosystem engineering by organisms, Oikos, vol. 11970212756219717817397618556101106978124232863812171749206342175610594, no. 12, pp. 1862 - 1869, 2010.
J. H. Y. Edwards and Langpap, C., Fuel Choice, Indoor Air pollution, and Children’s Health, Environment and Development Economics, vol. 17, no. 04, pp. 379 - 406, 2012.
S. L. Stephens, Boerner, R. E. J., Moghaddas, J. J., Moghaddas, E. E. Y., Collins, B. M., Dow, C. B., Edminster, C., Fiedler, C. E., Fry, D. L., Hartsough, B. R., Keeley, J. E., Knapp, E. E., McIver, J., Skinner, C. N., and Youngblood, A., Fuel treatment impacts on estimated wildfire carbon loss from forests in Montana, Oregon, California, and Arizona, Ecosphere, vol. 3, no. 5, p. art38, 2012.
P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M., and Loor, J. J., Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development., BMC Genomics, vol. 11, p. 331, 2010.
M. L. Evans, Shry, S. J., Jacobson, D. P., Sard, N. M., and Malley, K. G. ’, Functional gene diversity and migration timing in reintroduced Chinook salmon, Conservation Genetics, vol. 16, no. 6, pp. 1455 - 1464, 2015.
K. M. Moyes, Drackley, J. K., Morin, D. E., Bionaz, M., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., and Loor, J. J., Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling.., BMC Genomics, vol. 10, p. 542, 2009.
J. F. Hancock, Edger, P. P., Callow, P. W., Herlache, T., and Finn, C. E., Generating a Unique Germplasm Base for the Breeding of Day-neutral Strawberry Cultivars, HortScience, vol. 53, no. 7, pp. 1069 - 1071, 2018.
R. Bruskiewich, Senger, M., Davenport, G., Ruiz, M., Rouard, M., Hazekamp, T., Takeya, M., Doi, K., Satoh, K., Costa, M., Simon, R., Balaji, J., Akintunde, A., Mauleon, R., Wanchana, S., Shah, T., Anacleto, M., Portugal, A., Ulat, V. Jun, Thongjuea, S., Braak, K., Ritter, S., Dereeper, A., Skofic, M., Rojas, E., Martins, N., Pappas, G., Alamban, R., Almodiel, R., Barboza, L. Hendrix, Detras, J., Manansala, K., Mendoza, M. Jonathan, Morales, J., Peralta, B., Valerio, R., Zhang, Y., Gregorio, S., Hermocilla, J., Echavez, M., Yap, J. Michael, Farmer, A., Schiltz, G., Lee, J., Casstevens, T., Jaiswal, P., Meintjes, A., Wilkinson, M., Good, B., Wagner, J., Morris, J., Marshall, D., Collins, A., Kikuchi, S., Metz, T., McLaren, G., and van Hintum, T., The generation challenge programme platform: semantic standards and workbench for crop science., International journal of plant genomics, vol. 2008, p. 369601, 2008.
K. Gürcan, Mehlenbacher, S. A., and Erdogan, V., Genetic diversity in hazelnut cultivars from Black Sea countries assessed using SSR markers, Plant Breeding , vol. 129, pp. 422-434, 2010.
R. VanBuren, Bryant, D., Bushakra, J. M., Vining, K. J., Edger, P. P., Rowley, E. R., Priest, H. D., Michael, T. P., Lyons, E., Filichkin, S. A., Dossett, M., Finn, C. E., Bassil, N. V., and Mockler, T. C., The genome of black raspberry (Rubus occidentalis)., Plant J, vol. 87, no. 6, pp. 535-47, 2016.
A. A. Myburg, Grattapaglia, D., Tuskan, G. A., Hellsten, U., Hayes, R. D., Grimwood, J., Jenkins, J., Lindquist, E., Tice, H., Bauer, D., Goodstein, D. M., Dubchak, I., Poliakov, A., Mizrachi, E., Kullan, A. R. K., Hussey, S. G., Pinard, D., van der Merwe, K., Singh, P., van Jaarsveld, I., Silva-Junior, O. B., Togawa, R. C., Pappas, M. R., Faria, D. A., Sansaloni, C. P., Petroli, C. D., Yang, X., Ranjan, P., Tschaplinski, T. J., Ye, C. - Y., Li, T., Sterck, L., Vanneste, K., Murat, F., Soler, M., San Clemente, H., Saidi, N., Cassan-Wang, H., Dunand, C., Hefer, C. A., Bornberg-Bauer, E., Kersting, A. R., Vining, K., Amarasinghe, V., Ranik, M., Naithani, S., Elser, J., Boyd, A. E., Liston, A., Spatafora, J. W., Dharmwardhana, P., Raja, R., Sullivan, C., Romanel, E., Alves-Ferreira, M., Külheim, C., Foley, W., Carocha, V., Paiva, J., Kudrna, D., Brommonschenkel, S. H., Pasquali, G., Byrne, M., Rigault, P., Tibbits, J., Spokevicius, A., Jones, R. C., Steane, D. A., Vaillancourt, R. E., Potts, B. M., Joubert, F., Barry, K., Pappas, G. J., Strauss, S. H., Jaiswal, P., Grima-Pettenati, J., Salse, J., Van de Peer, Y., Rokhsar, D. S., and Schmutz, J., The genome of Eucalyptus grandis., Nature, vol. 510, pp. 356-62, 2014.
A. A. Myburg, Grattapaglia, D., Tuskan, G. A., Hellsten, U., Hayes, R. D., Grimwood, J., Jenkins, J., Lindquist, E., Tice, H., Bauer, D., Goodstein, D. M., Dubchak, I., Poliakov, A., Mizrachi, E., Kullan, A. R. K., Hussey, S. G., Pinard, D., van der Merwe, K., Singh, P., van Jaarsveld, I., Silva-Junior, O. B., Togawa, R. C., Pappas, M. R., Faria, D. A., Sansaloni, C. P., Petroli, C. D., Yang, X., Ranjan, P., Tschaplinski, T. J., Ye, C. - Y., Li, T., Sterck, L., Vanneste, K., Murat, F., Soler, çal, San Clemente, élène, Saidi, N., Cassan-Wang, H., Dunand, C., Hefer, C. A., Bornberg-Bauer, E., Kersting, A. R., Vining, K. J., Amarasinghe, V., Ranik, M., Naithani, S., Elser, J., Boyd, A. E., Liston, A., Spatafora, J. W., Dharmwardhana, P., Raja, R., Sullivan, C., Romanel, E., Alves-Ferreira, M., ülheim, C., Foley, W., Carocha, V., Paiva, J., Kudrna, D., Brommonschenkel, S. H., Pasquali, G., Byrne, M., Rigault, P., Tibbits, J., Spokevicius, A., Jones, R. C., Steane, D. A., Vaillancourt, éE., Potts, B. M., Joubert, F., Barry, K., Pappas, G. J., Strauss, S. H., Jaiswal, P., Grima-Pettenati, J., Salse, érôme, Van de Peer, Y., Rokhsar, D. S., and Schmutz, J., The genome of Eucalyptus grandis, Nature, vol. 51, no. 75, pp. 356 - 362, 2014.
K. E. Bushley, Raja, R., Jaiswal, P., Cumbie, J. S., Nonogaki, M., Boyd, A. E., C Owensby, A., Knaus, B. J., Elser, J., Miller, D., Di, Y., McPhail, K. L., and Spatafora, J. W., The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster, PLOS Genetics, vol. 9, 2013.
V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., The genome of woodland strawberry(Fragaria vesca)., Nature genetics, vol. 43, pp. 109-16, 2011.
V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., The genome of woodland strawberry(Fragaria vesca)., Nature genetics, vol. 43, pp. 109-16, 2011.
G. T. Slavov, DiFazio, S. P., Martin, J., Schackwitz, W., Muchero, W., Rodgers-Melnick, E., Lipphardt, M. F., Pennacchio, C. P., Hellsten, U., Pennacchio, L. A., Gunter, L. E., Ranjan, P., Vining, K. J., Pomraning, K. R., Wilhelm, L. J., Pellegrini, M., Mockler, T. C., Freitag, M., Geraldes, A., El-Kassaby, Y. A., Mansfield, S. D., Cronk, Q. C. B., Douglas, C. J., Strauss, S. H., Rokhsar, D., and Tuskan, G. A., Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa, New Phytologist, vol. 19, no. 3, pp. 713 - 725, 2012.
Y. P. Chen, Pettis, J. S., Zhao, Y., Liu, X., Tallon, L. J., Sadzewicz, L. D., Li, R., Zheng, H., Huang, S., Zhang, X., Hamilton, M. C., Pernal, S. F., Melathopoulos, A. P., Yan, X., and Evans, J. D., Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions, BMC Genomics, vol. 14, p. 451, 2013.
Yping Chen, Pettis, J. S., Zhao, Y., Liu, X., Tallon, L. J., Sadzewicz, L. D., Li, R., Zheng, H., Huang, S., Zhang, X., Hamilton, M. C., Pernal, S. F., Melathopoulos, A. P., Yan, X., and Evans, J. D., Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions, BMC Genomics, vol. 14, no. 1, p. 451, 2013.

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